PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18108.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 351aa    MW: 39987.2 Da    PI: 6.4009
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18108.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-0690113226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              k  lC f+ + G+C  G +CkF+H+
  mrna18108.1-v1.0-hybrid  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                              6679**7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-488114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06588115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003564.6158195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953158196IPR000571Zinc finger, CCCH-type
PfamPF165432.8E-11215286IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPMPD LSKTAAKKKK  60
EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR QNETMEEWDQ ETLEKVVESR RKEYNMNKPT DIVCKYFLEA VERKQYGWFW  180
VCPNGGKDCH YRHALPPGYI LKSQMKALLE EESDKIPIEE EIESQRAKLK TSTPMTPELF  240
MQWKKKKIAE RDAGLASQMA ERAKNDHASL FVDDAEAYEK YQRHQESEVA EKVSNIADGG  300
EPKSSATADD DAKVTNIDDD VDDDDLDINE LNELEARLSK ATIQEPGTSA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302836.10.0PREDICTED: zinc finger CCCH domain-containing protein 21-like
SwissprotQ0JHZ21e-165C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLB9SGS60.0B9SGS6_RICCO; Zinc finger protein, putative
STRINGPOPTR_0008s04540.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-150C3H family protein